Fitness for 1 genes in Pseudomonas putida KT2440

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Group	Condition	PP_3947
nitrogen source	2,6-diaminopimelic (N)	-1.7
nitrogen source	Nicotinic Acid (N)	-1.3
nitrogen source	Nicotinic Acid (N)	-1.3
carbon source	Valerolactone (C)	-1.3
nitrogen source	D-2-Aminobutyric (N)	-1.0
carbon source	acetate (C)	-1.0
phage	P. putida Missley MOI 0.1	-1.0
reactor	24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.	-0.9
carbon source	carbon source 2-Deoxy-D-glucose 50 mM	-0.8
pH	Growth at pH6 and (C) Trisodium citrate	-0.8
nitrogen source	nitrogen source nitrate 20mM	-0.8
stress	MOPS minimal media_Glucose20mM with Chloride 200 mM	-0.8
nitrogen source	nitrate (N)	-0.8
carbon source	1,3-Hexanediol (C)	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.8
temperature shift	Temperature shift 10_to_30	-0.7
carbon source	butyrate (C)	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.7
carbon source	L-Phenylalanine 5 mM (C)	-0.7
lb outgrowth control more dilute start	LB outgrowth control more dilute start	-0.7
stress	MOPS minimal media_Glucose20mM with PHB-HV-HH 0.1 mg/mL	-0.7
pH	Valerolactone (C) pH 6.5	-0.7
carbon source	Butanol (C)	-0.7
carbon source	carbon source 3-O-methyl-glucose 50 mM	-0.7
nitrogen source	L-pyroglutamic (N)	-0.7
nitrogen source	2,6-diaminopimelic (N)	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7
phage	P. putida Sci small MOI 0.1	+0.8
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.0
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