Fitness for 1 genes in Pseudomonas putida KT2440

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Group	Condition	PP_3945
nitrogen source	Nicotinic Acid (N)	-1.6
nitrogen source	Nicotinic Acid (N)	-1.6
temperature shift	Temperature shift 30_to_25; with MOPS	-0.6
carbon source	Myristic (C)	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5
carbon source	4-Aminobutyric 10 mM (C)	-0.5
pH	Growth at pH7 and (C) D-Glucose	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3
carbon source	4-Hydroxyvalerate (C) (40mM)	-0.3
carbon source	D-Glucose (C) 2.5 mM	-0.3
temperature shift	Temperature shift 10_to_30	-0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3
carbon source	Lignin Monomers (C)	-0.3
carbon source	L-Phenylalanine 5 mM (C)	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3
carbon source	L-Lysine 10 mM (C)	-0.3
carbon source	Nonanoic (C)	-0.3
phage	P. put South MOI 10	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.3
nitrogen source	nitrogen source nitrite 0.5mM	+0.3
temperature	Growth at 30C; with MOPS	+0.3
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3
nitrogen source	Urea (N)	+0.3
pH	Growth at pH8 and (C) Trisodium citrate	+0.3
nitrogen source	D-2-Aminobutyric (N)	+0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+0.5
		remove PP_3945