Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_3944
nitrogen source Nicotinic Acid (N) -1.5
nitrogen source Nicotinic Acid (N) -1.3
carbon source carbon source 2-Deoxy-D-glucose 100 mM -0.5
carbon source carbon source D-Glucose 55.5 mM -0.5
pH Valerolactone (C) pH 6.5 -0.5
stress R2A with Fusaric 480 ug/mL -0.5
pH pH 8 -0.5
nitrogen source NAG (N); with MOPS -0.5
carbon source Valerolactone (C) -0.4
phage P. putida PUT 7 MOI 1 -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4
stress 1-Pentanol 0.3 vol% +0.4
carbon source 3-Methyl-2-Oxobutanoic Acid (C) +0.4
carbon source 1,4-Butanediol (C) +0.4
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay +0.4
carbon source 1,4-Butanediol (C) +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.4
carbon source Oleic (C) +0.4
nitrogen source nitrogen source nitrite 0.5mM +0.4
stress Growth with Chloride 500 mM +0.4
pH Growth at pH7 and (C) D-Glucose +0.4
reactor 24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO. +0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5
carbon source D-Fructose (C) +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.5
stress MOPS minimal media_Glucose20mM with Lithium chloride 200 mM +0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.5
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PP_3944