Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3922
temperature shift	Temperature shift 30_to_4	-0.6
carbon source	3-methyl-1-butanol 0.25 vol% (C)	-0.5
nitrogen source	nitrogen source nitrite 1mM	-0.5
carbon source	Nonanoic (C)	-0.5
nitrogen source	DL-2-Aminobutyric (N)	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.4
stress	MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	-0.4
carbon source	4-Hydroxyvalerate (C) (40mM)	+0.4
carbon source	carbon source Glycerol 108.6 mM	+0.4
carbon source	D,L-Malic Acid (C)	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	+0.4
carbon source	Lignin Monomers (C)	+0.4
pH	pH 5	+0.4
carbon source	1,4-Butanediol (C)	+0.5
phage	PUT 8 MOI 1	+0.5
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5
pH	Valerolactone (C) pH 6.5	+0.5
pH	pH 8	+0.5
carbon source	Valerolactone (C)	+0.5
carbon source	L-Glutamic (C)	+0.5
stress	3-methyl-1-butanol 0.4 vol%	+0.5
temperature shift	Temperature shift 30_to_25; with MOPS	+0.5
nitrogen source	2,6-diaminopimelic (N)	+0.5
phage	P. putida South MOI 10	+0.6
carbon source	ferulate (C); with MOPS	+0.6
phage	P. putida South MOI 10	+0.6
micoeukaryotes	Acanthamoeba sp., muxed culture-2	+0.7
phage	P. put South MOI 10	+0.7
		remove PP_3922