Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3846
carbon source	D-Glucose (C)	-0.9
nitrogen source	NAG (N); with MOPS	-0.8
pH	Growth at pH6 and (C) Trisodium citrate	-0.8
carbon source	Valerolactone (C)	-0.7
carbon source	acetate (C)	-0.6
temperature shift	Temperature shift 30_to_25; with MOPS	-0.5
pH	D-Glucose (C) pH 6.5	-0.5
nitrogen source	nitrogen source nitrate 5mM	-0.5
nitrogen source	Ammonium chloride (N)	-0.5
pH	Valerolactone (C) pH 6.5	-0.5
pH	Growth at pH8 and (C) D-Glucose	-0.5
stress	R2A with Fusaric 480 ug/mL	-0.5
carbon source	carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM	-0.5
nitrogen source	Urea (N)	-0.5
stress	Growth with Chloride 200 mM; with MOPS	-0.5
temperature shift	Temperature shift 30_to_34; with MOPS	+0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5
stress	Cholinium glutamate 10 vol%	+0.5
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	+0.5
stress	MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.5
stress	MOPS minimal media_Glucose20mM with Lithium chloride 200 mM	+0.5
carbon source	4-Methyl-2-oxopentanoic (C)	+0.5
carbon source	Hexanoic (C)	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.5
carbon source	Hexanoic (C)	+0.5
phage	P. putida PUT 7 MOI 1	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.6
phage	P. putida Sci small MOI 0.1	+0.6
phage	P. putida Sci small MOI 0.1	+0.7
		remove PP_3846