Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3827
carbon source	2-Methylbutanoic (C)	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.6
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.5
pH	pH 9	-0.5
micoeukaryotes	C.elegans, mixed culture-2	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.5
r2a control with 0.2% methanol	R2A control with 0.2% methanol	-0.5
carbon source	1,3-Hexanediol (C)	-0.5
micoeukaryotes	Tetrahymena sp., Mixed culture-1	-0.4
carbon source	butyrate (C)	-0.4
carbon source	DL-3-Hydroxybutyric (C)	-0.4
phage	P. put South MOI 0.1	-0.4
reactor	40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO.	-0.4
nitrogen source	Hippuric (N)	-0.4
pH	Growth at pH7 and (C) Trisodium citrate	+0.4
temperature shift	Temperature shift 10_to_25; with MOPS	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4
temperature shift	Temperature shift 10_to_21	+0.4
pH	Growth at pH7 and (C) D-Glucose	+0.4
pH	Growth at pH9 and (C) Trisodium citrate	+0.4
nitrogen source	D-2-Aminobutyric (N)	+0.4
pH	Growth at pH6 and (C) D-Glucose	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5
carbon source	D-Glucose (C)	+0.5
phage	P. putida Sci small MOI 0.1	+0.6
phage	P. putida Sci small MOI 0.1	+0.6
phage	P. putida Missley MOI 0.1	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.6
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+0.7
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