Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3817
nitrogen source	NAG (N); with MOPS	-1.6
pH	Growth at pH7 and (C) D-Glucose	-1.5
carbon source	4-Hydroxyvalerate (C) (40mM)	-1.1
pH	Growth at pH7 and (C) Trisodium citrate	-1.0
carbon source	ferulate (C); with MOPS	-0.9
carbon source	2-Methylbutanoic (C)	-0.9
stress	MOPS minimal media_Glucose20mM with Chloride 200 mM	-0.9
temperature	Growth at 30C; with MOPS	-0.9
pH	Growth at pH6 and (C) D-Glucose	-0.9
phage	P. putida PUT 7 MOI 1	-0.8
carbon source	Decanoic (C)	-0.8
pH	Valerolactone (C) pH 6.5	-0.8
temperature	Growth at 30C; with MOPS	-0.8
temperature shift	Temperature shift 10_to_21; with MOPS	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.7
carbon source	D-Glucose (C); with MOPS	-0.7
carbon source	Valerolactone (C)	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.7
reactor	48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.	+0.7
phage	P. putida PUT10 MOI 0.1	+0.8
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.8
pH	pH 7	+0.8
pH	pH 8	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.0
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