Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_3812
stress R2A with Polymyxin B sulfate 0.002 mg/ml -1.4
nitrogen source nitrogen source nitrite 0.5mM -0.7
nitrogen source nitrogen source nitrite 1mM -0.6
nitrogen source Urea (N) -0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.6
nitrogen source nitrate (N) -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.5
pH Valerolactone (C) pH 6.5 -0.5
carbon source carbon source 2-Deoxy-D-glucose 10 mM -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.5
pH Growth at pH6 and (C) Trisodium citrate -0.5
carbon source Tween 20 (C) -0.4
carbon source Trisodium citrate (C) -0.4
carbon source D-Fructose (C) -0.4
stress Growth with Chloride 500 mM; with MOPS -0.4
nitrogen source D-2-Aminobutyric (N) -0.4
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.4
carbon source 3-methyl-1-butanol 0.25 vol% (C) -0.4
carbon source butyrate (C) -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.4
carbon source L-Phenylalanine 5 mM (C) -0.4
pH pH 7 -0.4
carbon source carbon source 4-vinylphenol 0.01 mM -0.4
temperature Growth at 25C; with MOPS +0.4
carbon source Protocatechuic Acid (C) +0.4
carbon source ferulate (C); with MOPS +0.4
no stress control Growth with no stress +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.5
nitrogen source Urea (N) +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.6
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PP_3812