Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3806
carbon source	3-Hydroxyhexanoic (C)	-4.7
nitrogen source	D-2-Aminobutyric (N)	-3.8
carbon source	3-Hydroxyhexanoic (C)	-3.0
carbon source	D-Glucose (C)	-2.6
nitrogen source	D-2-Aminobutyric (N)	-2.4
nitrogen source	Propiolactam (N)	-2.3
pH	Valerolactone (C) pH 6.5	-2.0
pH	D-Glucose (C) pH 7	-2.0
phage	PUT 8 MOI 1	-1.7
pH	Growth at pH8 and (C) D-Glucose	-1.7
pH	Growth at pH8 and (C) Trisodium citrate	-1.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.5
nitrogen source	nitrogen source nitrite 1mM	-1.5
carbon source	D-Glucose (C); with MOPS	-1.5
phage	P. put South MOI 10	-1.5
carbon source	ferulate (C); with MOPS	-1.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.4
carbon source	4-Methyl-2-oxopentanoic (C)	-1.4
reactor	24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.	-1.3
carbon source	rac-3-Hydroxypentanoic Acid (C)	-1.3
carbon source	DL-3-Hydroxyisobutyric (C)	-1.2
carbon source	L-Lysine (C)	-1.2
stress	NaCl stress 250 mM	-1.2
temperature shift	Temperature shift 10_to_30	-1.2
temperature shift	Temperature shift 30_to_21; with MOPS	-1.1
nitrogen source	no extra (N); with MOPS	-1.1
stress	MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL	-1.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+1.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.1
carbon source	carbon source 3-O-methyl-glucose 50 mM	+1.1
		remove PP_3806