Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_3778
phage PUT 8 MOI 1 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.6
carbon source ferulate (C); with MOPS -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.6
no stress control Growth with no stress -0.5
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5
carbon source Acetate Carbon Source (5mM) -0.5
pH pH 9 +0.5
carbon source Lignin Monomers (C) +0.5
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.5
pH pH 7 +0.5
nitrogen source nitrate (N) +0.5
carbon source Valerolactam (C) +0.5
carbon source D-Glucuronic Acid (C) +0.5
carbon source carbon source 2-Deoxy-D-glucose 100 mM +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.6
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO. +0.6
nitrogen source Glycine (N) +0.6
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO. +0.6
nitrogen source Hippuric (N) +0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.6
nitrogen source nitrogen source nitrite 1mM +0.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6
pH Growth at pH6 and (C) D-Glucose +0.6
carbon source ferulate (C); with MOPS +0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs +0.7
no stress control Growth with no stress +0.7
carbon source L-Glutamine (C) +0.7
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. +0.7
nitrogen source Hippuric (N) +0.8
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PP_3778