Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3733
phage	P. putida Sci Big MOI 0.1	-1.5
phage	P. putida Sci small MOI 0.1	-1.4
phage	P. putida PUT 7 MOI 1	-0.8
phage	P. putida Missley MOI 0.1	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.7
carbon source	1,3-Butandiol (C)	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.6
nitrogen source	2,6-diaminopimelic (N)	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5
nitrogen source	Urea (N); with MOPS	-0.5
carbon source	L-Phenylalanine 5 mM (C)	-0.5
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.5
carbon source	Rhamnogalacturonan - from potato (C)	-0.5
nitrogen source	Urea (N)	-0.5
carbon source	Sebacic (C)	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4
phage	P. putida Sci small MOI 0.1	-0.4
carbon source	L-Lysine 10 mM (C)	+0.4
carbon source	D-Glucose (C)	+0.4
supernatant	Supernatant; Burkholderia bryophila 376MFSha3.1 spent media 0.5x	+0.4
r2a control with 0.2% methanol	R2A control with 0.2% methanol	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.4
temperature	Growth at 25C; with MOPS	+0.4
nitrogen source	nitrogen source nitrite 0.5mM	+0.4
temperature shift	Temperature shift 30_to_10; with MOPS	+0.5
temperature shift	Temperature shift 30_to_4	+0.5
temperature shift	Temperature shift 30_to_25; with MOPS	+0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5
temperature	Growth at 30C	+0.6
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