Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3646
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.9
carbon source	3-Hydroxydecanoic (C)	-0.8
carbon source	Delta-Dodecalactone (C)	-0.7
nitrogen source	2,6-diaminopimelic (N)	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.6
nitrogen source	D-2-Aminobutyric (N)	-0.6
reactor	40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	-0.5
carbon source	D-Glucose (C)	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.5
temperature shift	Temperature shift 10_to_30	-0.5
pH	Growth at pH8 and (C) D-Glucose	-0.4
reactor	40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO.	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.4
phage	P. putida South MOI 1	-0.4
pH	Growth at pH6 and (C) Trisodium citrate	-0.4
temperature	Growth at 25C	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.4
phage	P. putida PUT10 MOI 10	+0.4
phage	P. putida Missley MOI 0.1	+0.4
stress	MOPS minimal media_Glucose20mM with PHB-HV-HH 0.1 mg/mL	+0.4
temperature shift	Temperature shift 10_to_25; with MOPS	+0.5
carbon source	D-Glucose (C); with MOPS	+0.6
carbon source	Sebacic (C)	+0.6
temperature shift	Temperature shift 10_to_25; with MOPS	+0.6
nitrogen source	D-2-Aminobutyric (N)	+0.7
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