Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3643
nitrogen source	Propandiamine (N)	-1.3
carbon source	Valerolactone (C)	-1.1
carbon source	L-Leucine (C)	-1.0
pH	Growth at pH9 and (C) Trisodium citrate	-1.0
temperature shift	Temperature shift 10_to_34; with MOPS	-1.0
micoeukaryotes	Dictyostellum sp.mixed culture-1	-1.0
microaerobic m9	microaerobic M9	-0.9
nitrogen source	NAG (N); with MOPS	-0.9
pH	Growth at pH8 and (C) Trisodium citrate	-0.9
no stress control	Growth with no stress	-0.8
carbon source	L-Phenylalanine 5 mM (C)	-0.8
carbon source	carbon source 2-Deoxy-D-glucose 10 mM	-0.8
nitrogen source	Propandiamine (N)	-0.8
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay	-0.8
phage	P. putida Sci small MOI 0.1	-0.8
carbon source	D-Galacturonic Acid (C)	-0.8
nitrogen source	NAG (N)	-0.8
stress	Butyrolactam 2 vol%	+0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.9
carbon source	1,3-Hexanediol (C)	+0.9
carbon source	D-Glucose (C)	+0.9
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.9
phage moi 100	Time6-phageFRS	+0.9
pH	Valerolactone (C) pH 6.5	+0.9
carbon source	carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM	+0.9
carbon source	Octanoic (C)	+1.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+1.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.2
nitrogen source	Propiolactam (N)	+1.4
		remove PP_3643