Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_3633
carbon source ferulate (C); with MOPS -0.8
phage P. putida PUT 7 MOI 1 -0.7
phage P. putida Sci small MOI 0.1 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.6
nitrogen source NAG (N) -0.5
stress 2-Ethylhexanol 0.4 vol% -0.5
carbon source ferulate (C); with MOPS -0.5
phage P. putida Sci Big MOI 0.1 -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.4
carbon source Valerolactone (C) -0.4
carbon source carbon source 4-vinylphenol 0.01 mM -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.4
mixed carbon source mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM -0.4
phage PUT8 MOI 10 -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.4
stress R2A with Fusaric 480 ug/mL -0.4
stress R2A with Fusaric 480 ug/mL -0.4
stress R2A with Fusaric 120 ug/mL -0.4
r2a control with 0.2x vogels R2A control with 0.2X Vogels -0.4
carbon source carbon source 3-O-methyl-glucose 50 mM -0.4
carbon source Vanillin (C) -0.4
nitrogen source 2,6-diaminopimelic (N) -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.4
carbon source Valeric (C) +0.4
nitrogen source D-2-Aminobutyric (N) +0.4
temperature Growth at 25C; with MOPS +0.4
temperature shift Temperature shift 10_to_25; with MOPS +0.4
temperature shift Temperature shift 30_to_21; with MOPS +0.4
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X +0.5
pH Growth at pH7 and (C) Trisodium citrate +0.7
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PP_3633