Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_3606
carbon source ferulate (C); with MOPS -0.6
nitrogen source 2,6-diaminopimelic (N) -0.6
phage P. putida PUT 7 MOI 1 -0.5
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM -0.5
nitrogen source D-2-Aminobutyric (N) -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4
pH Growth at pH6 and (C) Trisodium citrate -0.4
phage P. putida Missley MOI 0.1 -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.4
carbon source Crotonic (C) -0.4
phage P. putida South MOI 10 -0.4
carbon source Glucose (C) (20mM) -0.3
nitrogen source D-2-Aminobutyric (N) -0.3
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3
reactor 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO. -0.3
nitrogen source 1,6-Hexanediamine (N) -0.3
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.3
carbon source Hydroxy-L-Proline (C) -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.3
nitrogen source nitrite (N) -0.3
phage moi 100 Time6-phageFRS +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.3
temperature shift Temperature shift 30_to_25; with MOPS +0.3
micoeukaryotes Tetrahymena sp., Mixed culture-2 +0.3
pH Growth at pH6 and (C) Trisodium citrate +0.4
carbon source L-Leucine (C) +0.4
pH Growth at pH7 and (C) D-Glucose +0.4
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PP_3606