Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_3591
carbon source L-Lysine (C) -6.7
carbon source D-Lysine 10 mM (C) -6.3
carbon source D-Lysine 10 mM (C) -6.1
carbon source L-Lysine (C) -6.0
carbon source L-Lysine 10 mM (C) -5.7
carbon source L-Lysine (C) -4.3
nitrogen source D-Lysine (N) -2.7
nitrogen source D-Lysine (N) -2.2
pH Growth at pH7 and (C) D-Glucose -1.5
phage P. putida Sci small MOI 0.1 -1.4
carbon source carbon source Bisabolene 48.9 mM -1.3
carbon source Crotonic (C) -1.3
micoeukaryotes C.elegans, mixed culture-1 -1.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.2
nitrogen source nitrogen source nitrite 1mM -1.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -1.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -1.1
carbon source ferulate (C); with MOPS -1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -1.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.0
temperature shift Temperature shift 30_to_21 -0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.9
nitrogen source nitrate (N) -0.9
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay +0.9
pH Growth at pH6 and (C) Trisodium citrate +0.9
micoeukaryotes Tetrahymena sp., Mixed culture-2 +0.9
temperature Growth at 30C; with MOPS +0.9
nitrogen source 2,6-diaminopimelic (N) +1.0
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PP_3591