Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3587
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-4.4
carbon source	3-methyl-1-butanol (C)	-2.9
carbon source	3-methyl-1-butanol (C)	-2.5
phage	P. putida Missley MOI 0.1	-1.4
phage	P. putida Sci small MOI 0.1	-1.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-1.2
phage	P. putida PUT 7 MOI 1	-1.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.0
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.9
carbon source	carbon source 3-O-methyl-glucose 10 mM	-0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.8
carbon source	Valerolactone (C)	-0.8
no phage control	Time6-nophage	-0.7
temperature shift	Temperature shift 30_to_34; with MOPS	-0.7
phage	P. put PUT 10 MOI 10	-0.7
carbon source	L-tyrosine 5 mM (C)	-0.7
phage	P. putida South MOI 10	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.6
temperature shift	Temperature shift 30_to_4; with MOPS	+0.7
stress	Growth with Chloride 500 mM; with MOPS	+0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.7
no stress control	Growth with no stress	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7
nitrogen source	Ammonium chloride (N)	+0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.8
nitrogen source	Urea (N); with MOPS	+0.8
pH	Growth at pH7 and (C) Trisodium citrate	+0.8
pH	Growth at pH6 and (C) D-Glucose	+1.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+1.1
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