Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3520
phage	P. putida South MOI 10	-1.1
phage	P. put South MOI 10	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.7
phage	P. putida South MOI 10	-0.7
nitrogen source	nitrate (N)	-0.6
temperature	Growth at 30C; with MOPS	-0.6
nitrogen source	Ammonium chloride and TNT (N)	-0.6
nitrogen source	Ammonium chloride and TNT (N)	-0.6
pH	Growth at pH6 and (C) D-Glucose	-0.6
pH	Growth at pH9 and (C) Trisodium citrate	-0.5
nitrogen source	no extra (N); with MOPS	-0.5
temperature shift	Temperature shift 30_to_10; with MOPS	-0.5
carbon source	5-Aminovaleric 10 mM (C)	-0.5
stress	R2A with Fusaric 240 ug/mL	-0.4
stress	R2A with Fusaric 240 ug/mL	-0.4
stress	R2A with Fusaric 480 ug/mL	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.4
nitrogen source	Ammonium chloride and TNT (N)	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.4
carbon source	1,4-Butanediol (C)	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4
nitrogen source	2,6-diaminopimelic (N)	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4
stress	Isobutyl alcohol 0.6 vol%	+0.4
carbon source	Tween 20 (C)	+0.4
microaerobic m9	microaerobic M9	+0.4
phage	P. putida Missley MOI 0.1	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.5
carbon source	carbon source D-Glucose 55.5 mM	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7
		remove PP_3520