Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_3509
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -1.5
pH pH 7 -1.4
nitrogen source nitrite (N) -1.3
nitrogen source Ammonium chloride (N) -1.1
temperature shift Temperature shift 30_to_4; with MOPS -1.1
carbon source carbon source 2-Deoxy-D-glucose 100 mM -1.1
carbon source 4-Aminobutyric 10 mM (C) -1.0
carbon source ferulate (C); with MOPS -1.0
nitrogen source nitrate (N) -1.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.0
carbon source Crotonic (C) -1.0
carbon source 5-Aminovaleric 10 mM (C) -1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.0
temperature Growth at 25C -1.0
pH Growth at pH8 and (C) D-Glucose -1.0
no phage control Time6-nophage -0.9
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM -0.9
pH pH 4 -0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.9
phage P. putida Sci small MOI 0.1 -0.9
carbon source carbon source 4-vinylphenol 0.1 mM -0.9
carbon source carbon source D-Glucose 55.5 mM -0.9
nitrogen source Propandiamine (N) -0.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +1.0
nitrogen source nitrogen source nitrite 0.5mM +1.0
nitrogen source nitrogen source nitrite 1mM +1.0
phage P. putida PUT 7 MOI 1 +1.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +2.1
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PP_3509