Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3472
phage	P. putida PUT 7 MOI 1	-1.0
carbon source	Valeric (C)	-0.8
carbon source	Valerolactone (C)	-0.7
phage	PUT 8 MOI 1	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.5
carbon source	ferulate (C); with MOPS	-0.5
carbon source	3-methyl-1-butanol 0.25 vol% (C)	-0.5
temperature	Growth at 30C; with MOPS	-0.5
nitrogen source	Propandiamine (N)	-0.4
carbon source	Levulinic Acid (C)	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4
nitrogen source	nitrogen source nitrite 0.5mM	-0.4
pH	Growth at pH6 and (C) D-Glucose	-0.4
temperature	Growth at 10C; with MOPS	+0.4
nitrogen source	Ammonium chloride (N)	+0.4
r2a control with 0.2% methanol	R2A control with 0.2% methanol	+0.4
stress	Growth with Chloride 200 mM	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.4
temperature shift	Temperature shift 10_to_30; with MOPS	+0.5
temperature	Growth at 25C	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.5
nitrogen source	nitrate (N)	+0.5
pH	Growth at pH7 and (C) D-Glucose	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.5
phage	P. putida Sci small MOI 0.1	+0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.6
		remove PP_3472