Fitness for 1 genes in Pseudomonas putida KT2440

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Group	Condition	PP_3406
phage	P. putida Sci Big MOI 0.1	-0.7
pH	pH 8	-0.6
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM	-0.5
pH	Growth at pH6 and (C) Trisodium citrate	-0.5
pH	Growth at pH9 and (C) Trisodium citrate	-0.5
carbon source	3-Methyl-2-Oxobutanoic Acid (C)	-0.5
carbon source	D-Glucose (C)	-0.5
pH	Valerolactone (C) pH 6.5	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.4
temperature shift	Temperature shift 10_to_25; with MOPS	-0.4
carbon source	Vanillin (C)	-0.4
carbon source	carbon source 3-O-methyl-glucose 10 mM	-0.4
carbon source	D-Glucose (C)	-0.4
carbon source	DL-3-Hydroxybutyric (C)	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4
carbon source	carbon source 4-vinylphenol 0.01 mM	-0.4
pH	Growth at pH9 and (C) D-Glucose	-0.4
stress	R2A with Fusaric 120 ug/mL	-0.4
carbon source	1,4-Butanediol (C)	-0.4
nitrogen source	no extra (N); with MOPS	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.4
carbon source	L-Leucine (C)	+0.4
carbon source	4-Aminobutyric 10 mM (C)	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.5
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.9
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