Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3364
carbon source	L-Lysine 10 mM (C)	-0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4
pH	Growth at pH6 and (C) Trisodium citrate	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3
carbon source	ferulate (C); with MOPS	-0.3
carbon source	ferulate (C); with MOPS	-0.3
temperature	Growth at 30C; with MOPS	-0.3
nitrogen source	Propandiamine (N)	-0.3
carbon source	Valeric (C)	-0.3
nitrogen source	nitrogen source nitrate 20mM	-0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.2
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.2
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM	+0.2
micoeukaryotes	Dictyostellum sp.mixed culture-2	+0.2
carbon source	3-Hydroxydecanoic (C)	+0.3
nitrogen source	Caprolactam (N)	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.3
carbon source	Myristic (C)	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.3
stress	Growth with Chloride 200 mM; with MOPS	+0.3
carbon source	carbon source 3-O-methyl-glucose 50 mM	+0.3
toxin	pUC18_phdP1_pSU18T_docP1	+0.3
carbon source	L-Phenylalanine 5 mM (C)	+0.3
pH	pH 7	+0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4
nitrogen source	2,6-diaminopimelic (N)	+0.4
phage	P. putida Missley MOI 0.1	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5
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