Fitness for 1 genes in Pseudomonas putida KT2440

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Group	Condition	PP_3355
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-1.3
carbon source	ferulate (C); with MOPS	-1.1
pH	Growth at pH6 and (C) D-Glucose	-0.9
nitrogen source	NAG (N); with MOPS	-0.8
nitrogen source	Urea (N); with MOPS	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.5
stress	Growth with Chloride 500 mM	-0.5
carbon source	1,3-Butandiol (C)	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.5
lb outgrowth control more dilute start	LB outgrowth control more dilute start	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.4
carbon source	DL-2-Aminoadipic 10 mM (C)	-0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-0.4
carbon source	ferulate (C); with MOPS	-0.4
carbon source	2-Keto-D-gluconic hemicalcium salt (C)	-0.4
phage	P. putida PUT10 MOI 10	+0.4
carbon source	D-Glucose (C) with 20AA_mix_minus_Thr	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.4
carbon source	L-Lysine (C)	+0.4
nitrogen source	nitrogen source nitrate 5mM	+0.4
phage	P. putida Sci small MOI 0.1	+0.4
nitrogen source	Ammonium chloride (N)	+0.4
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	+0.5
nitrogen source	D-2-Aminobutyric (N)	+0.6
carbon source	L-Leucine (C)	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.0
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