Fitness for 1 genes in Pseudomonas putida KT2440

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Group	Condition	PP_3352
phage	P. putida Sci Big MOI 0.1	-0.8
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.	-0.6
nitrogen source	2,6-diaminopimelic (N)	-0.6
r2a control with 0.2% methanol	R2A control with 0.2% methanol	-0.5
pH	pH 9	-0.4
phage	P. putida Sci small MOI 0.1	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.4
nitrogen source	nitrogen source nitrite 0.5mM	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.3
carbon source	carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM	-0.3
pH	pH 7	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.3
carbon source	L-Phenylalanine 5 mM (C)	-0.3
temperature	LB_noSalt 30C	-0.3
temperature	Growth at 25C; with MOPS	+0.3
carbon source	D,L-Malic Acid (C)	+0.3
carbon source	5-Aminovaleric 10 mM (C)	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3
carbon source	3-methyl-1-butanol 0.25 vol% (C)	+0.3
carbon source	Tween 20 (C)	+0.4
pH	Growth at pH7 and (C) Trisodium citrate	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.4
temperature	Growth at 25C	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.5
carbon source	ferulate (C); with MOPS	+0.5
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