Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3320
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-1.8
nitrogen source	D-2-Aminobutyric (N)	-1.8
phage	PUT 8 MOI 1	-1.6
pH	Growth at pH6 and (C) D-Glucose	-1.3
carbon source	D-Glucose (C); with MOPS	-1.2
phage	P. putida PUT10 MOI 10	-1.1
carbon source	DL-3-Hydroxybutyric (C)	-1.1
carbon source	ferulate (C); with MOPS	-1.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.0
pH	Growth at pH8 and (C) D-Glucose	-1.0
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.0
stress	R2A with Fusaric 120 ug/mL	-1.0
carbon source	Levulinic Acid (C)	-1.0
pH	Growth at pH6 and (C) Trisodium citrate	-1.0
pH	Growth at pH7 and (C) Trisodium citrate	-1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-1.0
carbon source	L-Arginine (C)	-1.0
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay	-1.0
carbon source	L-Leucine (C)	-0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.9
nitrogen source	nitrogen source nitrate 5mM	+0.9
pH	pH 7	+1.0
reactor	40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 2.15g/hr dextrose, set to 30% DO.	+1.0
pH	pH 8	+1.0
pH	pH 6	+1.1
carbon source	carbon source 3-O-methyl-glucose 50 mM	+1.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+1.2
carbon source	Valerolactone (C)	+1.3
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