Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3310
phage	P. putida PUT 7 MOI 1	-0.9
phage	P. putida Missley MOI 0.1	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.4
carbon source	4-Methyl-2-oxopentanoic (C)	-0.4
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-0.3
carbon source	D-Glucose (C)	-0.3
phage	P. put South MOI 10	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.3
supernatant	Supernatant; Burkholderia bryophila 376MFSha3.1 spent media 0.5x	-0.3
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 4-benzoyl-L-phenylalanine 5 mM	-0.3
stress	R2A with Fusaric 240 ug/mL	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.3
pH	Growth at pH6 and (C) Trisodium citrate	-0.3
temperature shift	Temperature shift 30_to_21; with MOPS	-0.3
carbon source	benzoic (C)	-0.2
stress	Growth with Chloride 500 mM	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.3
carbon source	Hexanoic (C)	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.3
pH	Growth at pH7 and (C) D-Glucose	+0.3
carbon source	Valeric (C)	+0.3
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	+0.4
carbon source	Butanol (C)	+0.4
pH	Growth at pH7 and (C) Trisodium citrate	+0.4
		remove PP_3310