Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3283
carbon source	Phenylacetic (C)	-6.4
carbon source	Phenylacetic (C)	-4.8
phage	P. putida Sci small MOI 0.1	-1.3
phage	P. putida Sci Big MOI 0.1	-1.2
phage	P. putida PUT 7 MOI 1	-1.0
phage	PUT 8 MOI 1	-0.9
phage	P. putida Sci small MOI 0.1	-0.8
nitrogen source	nitrogen source nitrite 1mM	-0.8
nitrogen source	NAG (N); with MOPS	-0.7
carbon source	D-Lysine 10 mM (C)	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.7
nitrogen source	NAG (N); with MOPS	-0.6
nitrogen source	nitrogen source nitrate 5mM	-0.6
nitrogen source	nitrogen source nitrite 0.5mM	-0.6
lb	LB	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.6
carbon source	Valeric (C)	-0.6
nitrogen source	nitrogen source Ammonium chloride 20mM	-0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5
carbon source	Lignin Monomers (C)	-0.5
carbon source	Nonanoic (C)	+0.5
temperature shift	Temperature shift 10_to_25; with MOPS	+0.5
stress	R2A with Fusaric 240 ug/mL	+0.6
nitrogen source	nitrite (N)	+0.6
reactor	24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.	+0.6
pH	pH 8	+0.6
time series	Timeseries; MIN condition; Bioreplicate 1; Time 7hrs; Measurement	+0.6
carbon source	D-Glucose (C)	+0.7
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.8
		remove PP_3283