Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3282
carbon source	Phenylacetic (C)	-7.6
carbon source	Phenylacetic (C)	-4.5
pH	Growth at pH7 and (C) Trisodium citrate	-1.0
phage	P. putida PUT 7 MOI 1	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.6
temperature	Growth at 25C; with MOPS	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.4
pH	Growth at pH8 and (C) D-Glucose	-0.4
pH	Valerolactone (C) pH 6.5	-0.4
stress	R2A with Fusaric 480 ug/mL	-0.4
temperature shift	Temperature shift 30_to_10; with MOPS	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.4
micoeukaryotes	C.elegans, mixed culture-2	-0.3
micoeukaryotes	Dictyostellum sp.mixed culture-2	-0.3
carbon source	4-Methyl-2-oxopentanoic (C)	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.3
phage	P. putida Sci small MOI 0.1	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.3
phage	P. putida compost MOI 0.1	-0.3
carbon source	3-methyl-1-butanol 0.25 vol% (C)	-0.3
pH	Growth at pH6 and (C) Trisodium citrate	+0.3
pH	pH 8	+0.3
temperature shift	Temperature shift 10_to_25; with MOPS	+0.4
nitrogen source	Urea (N)	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.4
anaerobic m9	anaerobic M9	+0.4
temperature	Growth at 25C	+0.4
carbon source	Trisodium citrate (C)	+0.5
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