Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3281
carbon source	Phenylacetic (C)	-3.2
carbon source	Phenylacetic (C)	-2.5
phage	P. putida PUT 7 MOI 1	-0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7
carbon source	3-methyl-1-butanol 0.25 vol% (C)	-0.7
r2a control with 0.2% methanol	R2A control with 0.2% methanol	-0.6
nitrogen source	Urea (N)	-0.6
stress	Growth with Chloride 200 mM; with MOPS	-0.6
stress	R2A with Fusaric 240 ug/mL	-0.6
pH	Growth at pH8 and (C) Trisodium citrate	-0.6
carbon source	D-Lysine 10 mM (C)	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.6
stress	Geraniol 1 vol%	-0.6
temperature shift	Temperature shift 30_to_21; with MOPS	-0.5
stress	Growth with Chloride 500 mM; with MOPS	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.5
carbon source	butyrate (C)	-0.5
nitrogen source	Urea (N)	-0.5
temperature shift	Temperature shift 10_to_34; with MOPS	-0.5
carbon source	Tween 20 (C)	-0.5
pH	Growth at pH6 and (C) Trisodium citrate	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.5
nitrogen source	D-2-Aminobutyric (N)	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.6
phage	P. putida Sci small MOI 0.1	+0.6
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