Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3280
carbon source	Phenylacetic (C)	-6.4
carbon source	Phenylacetic (C)	-3.7
phage	P. putida Sci small MOI 0.1	-3.6
carbon source	Myristic (C)	-1.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-1.2
carbon source	Valerolactone (C)	-1.1
nitrogen source	nitrate (N)	-1.0
carbon source	D-Glucose (C); with MOPS	-1.0
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM	-0.9
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.9
temperature shift	Temperature shift 30_to_34; with MOPS	-0.9
pH	Growth at pH6 and (C) Trisodium citrate	-0.9
stress	Growth with Chloride 500 mM; with MOPS	-0.9
nitrogen source	Urea (N)	-0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.9
nitrogen source	D-2-Aminobutyric (N)	-0.9
pH	Growth at pH7 and (C) Trisodium citrate	-0.8
stress	MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.8
no stress control	Growth with no stress	-0.7
pH	pH 8	-0.7
carbon source	4-Aminobutyric 10 mM (C)	-0.7
phage	P. putida Sci small MOI 0.1	-0.7
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.8
stress	MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL	+0.8
nitrogen source	D-2-Aminobutyric (N)	+0.8
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+1.0
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