Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_3278
carbon source Phenylacetic (C) -5.8
carbon source Phenylacetic (C) -3.5
phage P. putida Sci Big MOI 0.1 -1.6
phage P. putida Missley MOI 0.1 -1.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.0
stress Growth with Chloride 500 mM -1.0
pH Valerolactone (C) pH 6.5 -0.9
temperature Growth at 30C; with MOPS -0.8
carbon source carbon source 3-O-methyl-glucose 50 mM -0.8
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8
carbon source carbon source 4-vinylphenol 0.01 mM -0.7
carbon source L-Phenylalanine 5 mM (C) -0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.6
pH Growth at pH6 and (C) D-Glucose -0.6
carbon source Delta-Decalactone (C) -0.6
temperature Growth at 34C -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.6
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6
carbon source Delta-Nonalactone (C) -0.6
carbon source DL-3-Hydroxyisobutyric (C) -0.6
carbon source acetate (C) -0.5
stress Growth with Chloride 200 mM; with MOPS -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.5
nitrogen source NAG (N); with MOPS +0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.5
phage P. putida Sci small MOI 0.1 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6
nitrogen source nitrogen source nitrite 0.5mM +0.6
nitrogen source nitrogen source nitrite 1mM +0.9
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PP_3278