Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_3270
carbon source Phenylacetic (C) -6.2
carbon source Phenylacetic (C) -4.8
phage P. putida PUT 7 MOI 1 -0.5
carbon source acetate (C) -0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.4
stress R2A with Fusaric 240 ug/mL -0.4
carbon source ferulate (C); with MOPS -0.4
nitrogen source nitrate (N) -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.4
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X -0.4
r2a control R2A control -0.4
temperature shift Temperature shift 30_to_25; with MOPS -0.4
stress Growth with Chloride 200 mM -0.4
temperature Growth at 25C -0.4
carbon source ferulate (C); with MOPS -0.4
phage P. putida compost MOI 0.1 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.3
pH Growth at pH9 and (C) Trisodium citrate -0.3
reactor 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO. -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.3
nitrogen source nitrate (N) -0.3
temperature shift Temperature shift 30_to_21; with MOPS -0.3
carbon source DL-2-Aminoadipic 10 mM (C) -0.3
temperature Growth at 30C -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3
carbon source 2,3-Butanediol (C) +0.4
nitrogen source D-2-Aminobutyric (N) +0.4
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6
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PP_3270