Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3226
pH	Valerolactone (C) pH 6.5	-1.3
pH	Growth at pH7 and (C) D-Glucose	-0.9
carbon source	butyrate (C)	-0.9
nitrogen source	2,6-diaminopimelic (N)	-0.8
pH	Growth at pH6 and (C) D-Glucose	-0.8
carbon source	ferulate (C); with MOPS	-0.7
phage	PUT8 MOI 0.1	-0.7
nitrogen source	nitrogen source nitrite 1mM	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.6
pH	D-Glucose (C) pH 6	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5
stress	Butyrolactam 2 vol%	-0.5
microaerobic m9	microaerobic M9	-0.5
phage	P. putida Sci Big MOI 0.1	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.5
carbon source	Octanoic (C)	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.5
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5
carbon source	Valerolactone (C)	-0.4
carbon source	carbon source Bisabolene 48.9 mM	+0.4
nitrogen source	Ammonium chloride (N)	+0.5
nitrogen source	TNT (N)	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.5
carbon source	carbon source Glycerol 108.6 mM	+0.5
nitrogen source	D-2-Aminobutyric (N)	+0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7
pH	pH 9	+0.7
		remove PP_3226