Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3207
phage	P. putida Sci Big MOI 0.1	-0.7
pH	Growth at pH7 and (C) Trisodium citrate	-0.7
pH	pH 7	-0.7
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.6
temperature shift	Temperature shift 30_to_25; with MOPS	-0.6
temperature shift	Temperature shift 10_to_30; with MOPS	-0.6
carbon source	carbon source 4-vinylphenol 0.1 mM	-0.6
nitrogen source	Ammonium chloride (N); with MOPS	-0.6
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM	-0.5
pH	Growth at pH8 and (C) D-Glucose	-0.5
no stress control	Growth with no stress	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5
pH	Growth at pH9 and (C) Trisodium citrate	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	-0.4
stress	Growth with Chloride 500 mM; with MOPS	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.4
time series	Timeseries; MAX condition; Bioreplicate 1; Time 5hrs; Measurement	-0.4
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.	+0.4
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.5
carbon source	Tween 20 (C)	+0.5
stress	Butanol 0.6 vol%	+0.5
phage	P. putida South MOI 10	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7
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