Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_3191
carbon source carbon source 3-O-methyl-glucose 50 mM -1.2
carbon source Myristic (C) -1.1
carbon source carbon source 2-Deoxy-D-glucose 50 mM -1.0
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM -1.0
stress Growth with Chloride 500 mM; with MOPS -1.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.8
pH pH 8 -0.8
pH pH 7 -0.8
no stress control Growth with no stress -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.8
pH pH 4 -0.8
temperature Growth at 30C -0.8
carbon source butyrate (C) -0.7
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.7
carbon source L-Arginine (C) -0.7
carbon source D-Glucose (C) -0.7
nitrogen source D-2-Aminobutyric (N) -0.7
carbon source L-Leucine (C) -0.7
micoeukaryotes Acanthamoeba sp., muxed culture-2 -0.7
carbon source carbon source Bisabolene 48.9 mM -0.7
nitrogen source Ammonium chloride (N) -0.7
carbon source Tween 20 (C) -0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.7
no phage control No phage control +0.6
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.7
pH Valerolactone (C) pH 6.5 +0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.8
phage P. putida PUT 7 MOI 1 +0.9
phage P. putida Sci small MOI 0.1 +1.3
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PP_3191