Fitness for 1 genes in Pseudomonas putida KT2440

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Group	Condition	PP_3185
nitrogen source	Propiolactam (N)	-1.7
carbon source	acetate (C)	-1.5
pH	Growth at pH6 and (C) D-Glucose	-1.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-1.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-1.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-1.2
nitrogen source	nitrogen source nitrite 1mM	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.1
nitrogen source	NAG (N); with MOPS	-1.0
phage	P. putida Sci small MOI 0.1	-1.0
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-1.0
temperature	Growth at 30C; with MOPS	-1.0
pH	Growth at pH7 and (C) Trisodium citrate	-1.0
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.9
pH	D-Glucose (C) pH 6.5	-0.9
nitrogen source	3,5-Dinitrosalicylic (N)	-0.9
temperature shift	Temperature shift 30_to_34; with MOPS	-0.9
no stress control	Growth with no stress	-0.9
carbon source	L-Phenylalanine 5 mM (C)	-0.9
r2a control	R2A control	-0.9
nitrogen source	2,6-diaminopimelic (N)	-0.8
nitrogen source	nitrogen source Ammonium chloride 20mM	-0.8
carbon source	Valeric (C)	-0.8
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8
temperature	Growth at 10C; with MOPS	-0.8
nitrogen source	D-2-Aminobutyric (N)	-0.8
carbon source	D-Glucose (C) 1.25 mM	-0.8
temperature shift	Temperature shift 30_to_10; with MOPS	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.8
carbon source	ferulate (C); with MOPS	+0.8
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