Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3175
carbon source	carbon source D-Glucose 55.5 mM	-1.1
pH	Growth at pH7 and (C) Trisodium citrate	-0.8
pH	pH 5	-0.7
phage	P. putida Sci small MOI 0.1	-0.7
phage	P. putida PUT 7 MOI 1	-0.7
temperature shift	Temperature shift 10_to_30; with MOPS	-0.6
carbon source	Valeric (C)	-0.6
carbon source	1,3-Butandiol (C)	-0.6
carbon source	acetate (C)	-0.6
pH	pH 9	-0.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5
nitrogen source	Urea (N)	-0.5
phage	P. put PUT 10 MOI 10	-0.5
nitrogen source	3,5-Dinitrosalicylic (N)	-0.5
nitrogen source	2,6-diaminopimelic (N)	-0.5
carbon source	Rhamnogalacturonan - from potato (C)	-0.5
pH	pH 4	-0.5
carbon source	2,3-Butanediol (C)	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.5
no stress control	Growth with no stress	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	+0.6
mixed community	Putida_ML5X with Paraburkholderia sabiae T6SS mutant	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.8
		remove PP_3175