Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3163
carbon source	benzoic (C)	-3.7
carbon source	benzoic (C)	-3.5
carbon source	Trisodium citrate (C)	-0.9
carbon source	acetate (C)	-0.8
carbon source	carbon source 3-O-methyl-glucose 50 mM	-0.7
carbon source	benzoic (C)	-0.7
carbon source	butyrate (C)	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.7
temperature	Growth at 25C	-0.7
nitrogen source	Hippuric (N)	-0.6
nitrogen source	2,6-diaminopimelic (N)	-0.6
pH	pH 9	-0.6
carbon source	carbon source D-Glucose 55.5 mM	-0.6
carbon source	ferulate (C); with MOPS	-0.5
pH	Growth at pH8 and (C) D-Glucose	-0.5
nitrogen source	Propandiamine (N)	-0.5
nitrogen source	Ammonium chloride (N); with MOPS	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.5
phage	P. putida Sci small MOI 0.1	-0.5
carbon source	Protocatechuic Acid (C)	-0.4
carbon source	Delta-Decalactone (C)	-0.4
carbon source	Myristic (C)	-0.4
nitrogen source	Hydantoin (N)	-0.4
nitrogen source	Hippuric (N)	-0.4
nitrogen source	NAG (N); with MOPS	+0.4
phage	P. putida Sci small MOI 0.1	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7
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