Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3157
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM	-1.9
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM	-1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.7
pH	Growth at pH6 and (C) D-Glucose	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.6
phage	P. put PUT 10 MOI 10	-0.5
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	-0.4
carbon source	L-Phenylalanine 5 mM (C)	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.4
stress	3-methyl-1-butanol 0.4 vol%	-0.4
carbon source	D-Glucose (C) with 20AA_mix_minus_Cys	-0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.4
temperature shift	Temperature shift 30_to_21; with MOPS	+0.4
phage	PUT 8 MOI 1	+0.4
temperature shift	Temperature shift 10_to_25	+0.4
no stress control	Growth with no stress	+0.4
nitrogen source	Ammonium chloride (N)	+0.4
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	+0.4
pH	pH 4	+0.5
carbon source	carbon source 3-O-methyl-glucose 50 mM	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5
pH	pH 9	+0.5
nitrogen source	D-2-Aminobutyric (N)	+0.6
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