Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_3151
carbon source Valerolactam 10 mM (C) -1.2
phage P. putida Sci small MOI 0.1 -1.0
carbon source 5-Aminovaleric 10 mM (C) -0.8
nitrogen source 5-Aminovaleric (N) -0.6
nitrogen source 5-Aminovaleric (N) -0.6
nitrogen source D-2-Aminobutyric (N) -0.6
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.5
carbon source 5-Aminovaleric 10 mM (C) -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.5
carbon source 1,3-Butandiol (C) -0.5
pH Growth at pH7 and (C) D-Glucose -0.4
phage P. putida PUT 7 MOI 1 -0.4
pH Growth at pH7 and (C) D-Glucose -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.4
nitrogen source no extra (N); with MOPS -0.4
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4
carbon source Trisodium citrate (C) -0.4
r2a control R2A control -0.4
carbon source ferulate (C); with MOPS -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.4
nitrogen source nitrate (N) -0.3
nitrogen source Imidazole (N) -0.3
stress 1-Pentanol 0.3 vol% +0.3
pH pH 6 +0.4
nitrogen source nitrogen source nitrite 0.5mM +0.4
temperature Growth at 25C; with MOPS +0.4
phage PUT8 MOI 0.1 +0.4
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PP_3151