Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3120
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8
nitrogen source	nitrogen source nitrite 1mM	-0.8
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	-0.7
pH	Growth at pH6 and (C) D-Glucose	-0.7
pH	Growth at pH7 and (C) D-Glucose	-0.7
nitrogen source	2,6-diaminopimelic (N)	-0.6
carbon source	3-Hydroxydecanoic (C)	-0.6
temperature shift	Temperature shift 30_to_25	-0.6
temperature shift	Temperature shift 10_to_30; with MOPS	-0.5
carbon source	D-Lysine 10 mM (C)	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.5
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.5
carbon source	Hexanoic (C)	-0.5
carbon source	D-Glucose (C)	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.5
nitrogen source	Urea (N)	-0.5
pH	Growth at pH9 and (C) Trisodium citrate	-0.5
carbon source	ferulate (C); with MOPS	-0.5
carbon source	D-Glucose (C); with MOPS	-0.4
pH	Growth at pH6 and (C) D-Glucose	+0.5
stress	Geraniol 1 vol%	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5
stress	Cholinium alpha ketoglutarate 10 vol%	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.6
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.6
phage	P. putida Sci small MOI 0.1	+0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.3
		remove PP_3120