Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3119
phage	P. putida PUT 7 MOI 1	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.5
nitrogen source	D-2-Aminobutyric (N)	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4
phage	P. putida Sci Big MOI 0.1	-0.4
carbon source	carbon source 2-Deoxy-D-glucose 50 mM	-0.3
nitrogen source	nitrogen source nitrate 5mM	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.3
temperature shift	Temperature shift 30_to_21; with MOPS	-0.3
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3
nitrogen source	nitrogen source nitrite 0.5mM	-0.3
carbon source	carbon source 2-Deoxy-D-glucose 10 mM	-0.3
pH	Growth at pH6 and (C) Trisodium citrate	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.3
stress	MOPS minimal media_Glucose20mM with PHB-HV-HH 0.1 mg/mL	-0.3
carbon source	3-Hydroxypropionate (C)	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.3
carbon source	Tween 20 (C)	-0.3
stress	R2A with Fusaric 240 ug/mL	-0.2
nitrogen source	D-2-Aminobutyric (N)	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.2
pH	Growth at pH6 and (C) Trisodium citrate	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.2
phage	P. putida PUT10 MOI 10	+0.3
temperature shift	Temperature shift 10_to_30; with MOPS	+0.3
nitrogen source	Urea (N)	+0.3
nitrogen source	Ammonium chloride and TNT (N)	+0.3
nitrogen source	TNT (N)	+0.3
carbon source	ferulate (C); with MOPS	+0.4
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