Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3116
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-1.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-1.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-1.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.1
carbon source	L-Leucine (C)	-1.0
time series	Timeseries; MAX condition; Bioreplicate 1; Time 4hrs; Measurement	-1.0
pH	Growth at pH9 and (C) Trisodium citrate	-0.9
temperature	Growth at 30C; with MOPS	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.9
phage moi 100	Time6-phageFRS	-0.8
time series	Timeseries; MAX condition; Bioreplicate 1; Time 5hrs; Measurement	-0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8
pH	Valerolactone (C) pH 6.5	-0.8
stress	R2A with Fusaric 480 ug/mL	-0.8
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	-0.8
carbon source	L-Lysine 10 mM (C)	-0.8
temperature shift	Temperature shift 30_to_34	-0.8
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.8
stress	NaCl stress 250 mM	+0.8
carbon source	D-Glucose (C)	+0.8
temperature shift	Temperature shift 10_to_25	+0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	+0.8
pH	Growth at pH6 and (C) Trisodium citrate	+0.9
temperature shift	Temperature shift 30_to_4; with MOPS	+1.0
nitrogen source	Urea (N)	+1.0
phage	PUT 8 MOI 1	+1.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+1.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.3
		remove PP_3116