Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3080
carbon source	L-Phenylalanine 5 mM (C)	-2.9
carbon source	L-Phenylalanine 5 mM (C)	-2.6
carbon source	L-Phenylalanine 5 mM (C)	-2.5
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM	-1.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.7
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM	-1.5
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM	-1.5
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM	-1.5
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM	-1.4
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM	-1.4
temperature shift	Temperature shift 10_to_30; with MOPS	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.9
nitrogen source	nitrogen source Ammonium chloride 20mM	-0.9
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM	-0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.8
nitrogen source	nitrogen source nitrite 1mM	-0.8
nitrogen source	Urea (N)	-0.8
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.7
phage	P. putida Sci small MOI 0.1	-0.7
carbon source	3-methyl-1-butanol (C)	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.7
nitrogen source	Urea (N)	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.7
nitrogen source	nitrogen source nitrate 5mM	-0.7
carbon source	Acetate Carbon Source (20mM)	-0.7
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.6
pH	Growth at pH6 and (C) Trisodium citrate	-0.6
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	+0.6
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