Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3029
nitrogen source	2,6-diaminopimelic (N)	-0.9
phage	PUT8 MOI 10	-0.6
nitrogen source	Ammonium chloride and TNT (N)	-0.6
pH	Growth at pH6 and (C) D-Glucose	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.5
carbon source	ferulate (C); with MOPS	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5
reactor_pregrowth	Adaptation in M9 media timecourse 1; day 2	-0.5
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.5
carbon source	ferulate (C); with MOPS	-0.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	-0.4
carbon source	Glucose (C) (20mM)	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4
stress	R2A with Fusaric 240 ug/mL	-0.4
carbon source	carbon source D-Glucose 55.5 mM	-0.4
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	-0.4
carbon source	Valeric (C)	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4
pH	Growth at pH7 and (C) D-Glucose	+0.4
stress	Growth with Chloride 500 mM; with MOPS	+0.4
nitrogen source	no extra (N); with MOPS	+0.4
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	+0.4
nitrogen source	Urea (N)	+0.4
carbon source	acetate (C)	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.5
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