Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_3016
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.8
phage P. putida South MOI 10 -0.7
carbon source D-Glucose (C); with MOPS -0.6
no stress control Growth with no stress -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.5
pH Growth at pH7 and (C) Trisodium citrate -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.4
carbon source Rhamnogalacturonan - from potato (C) -0.4
nitrogen source 2,6-diaminopimelic (N) -0.4
temperature shift Temperature shift 10_to_25; with MOPS -0.4
nitrogen source nitrogen source nitrite 1mM -0.4
phage P. putida South MOI 10 -0.4
temperature shift Temperature shift 30_to_21; with MOPS -0.4
stress 2-Piperidinone 3 vol% -0.4
no phage control Time6-nophage -0.4
phage P. put South MOI 1 -0.4
nitrogen source Urea (N) -0.4
pH Growth at pH8 and (C) D-Glucose -0.4
carbon source 2,3-Butanediol (C) -0.4
nitrogen source 4-Guanidinobutyric (N) -0.4
pH pH 9 +0.4
stress R2A with Fusaric 240 ug/mL +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.4
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4
phage P. putida Sci Big MOI 0.1 +0.5
stress 3-methyl-1-butanol 0.4 vol% +0.5
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.6
phage P. putida Sci small MOI 0.1 +0.7
stress R2A with Polymyxin B sulfate 0.001 mg/ml +0.7
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PP_3016