Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2994
phage	P. putida Sci small MOI 0.1	-0.6
nitrogen source	D-2-Aminobutyric (N)	-0.6
nitrogen source	nitrogen source nitrate 5mM	-0.4
carbon source	DL-3-Hydroxybutyric (C)	-0.4
nitrogen source	Ammonium chloride (N)	-0.4
carbon source	Lauric (C)	-0.4
carbon source	4-Hydroxyvalerate (C) (40mM)	-0.4
pH	Growth at pH6 and (C) D-Glucose	+0.4
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.4
carbon source	carbon source 3-O-methyl-glucose 50 mM	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.4
carbon source	4-Hydroxybenzoic Acid (C)	+0.4
temperature shift	Temperature shift 30_to_25	+0.4
phage	P. put PUT 10 MOI 1	+0.4
carbon source	3-Hydroxyhexanoic (C)	+0.5
temperature shift	Temperature shift 10_to_30	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.5
pH	LB 0.1x with 55.5 mM D-Glucose; pH 4.6	+0.5
pH	Growth at pH8 and (C) D-Glucose	+0.5
nitrogen source	nitrogen source nitrate 5mM	+0.5
temperature shift	Temperature shift 10_to_30; with MOPS	+0.5
temperature shift	Temperature shift 30_to_21; with MOPS	+0.5
reactor	48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.	+0.5
carbon source	D-Glucuronic gamma lactone (C)	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	+0.5
nitrogen source	Urea (N); with MOPS	+0.5
phage	P. putida Sci Big MOI 0.1	+0.6
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+0.6
nitrogen source	2,6-diaminopimelic (N)	+0.7
		remove PP_2994