Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2988
pH	Growth at pH7 and (C) Trisodium citrate	-0.8
phage	P. putida Sci Big MOI 0.1	-0.8
pH	Growth at pH9 and (C) Trisodium citrate	-0.8
carbon source	5-Aminovaleric 10 mM (C)	-0.6
pH	Growth at pH8 and (C) Trisodium citrate	-0.6
microaerobic m9	microaerobic M9	-0.6
phage	PUT8 MOI 0.1	-0.6
nitrogen source	2,6-diaminopimelic (N)	-0.5
no stress control	Growth with no stress	-0.5
carbon source	3-Hydroxydecanoic (C)	-0.5
temperature shift	Temperature shift 30_to_21; with MOPS	-0.5
temperature shift	Temperature shift 10_to_30; with MOPS	-0.5
nitrogen source	2,6-diaminopimelic (N)	-0.5
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.	-0.5
phage	P. putida PUT 7 MOI 1	-0.5
pH	Growth at pH9 and (C) D-Glucose	-0.5
pH	Valerolactone (C) pH 6.5	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.5
temperature shift	Temperature shift 10_to_21; with MOPS	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4
carbon source	carbon source 3-O-methyl-glucose 10 mM	-0.4
nitrogen source	Ammonium chloride (N)	-0.4
carbon source	L-Lysine (C)	-0.4
pH	Growth at pH6 and (C) D-Glucose	-0.4
carbon source	4-Methyl-2-oxopentanoic (C)	-0.4
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.4
pH	Growth at pH9 and (C) Trisodium citrate	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.4
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.6
		remove PP_2988