Fitness for 1 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2960
phage	P. putida Sci Big MOI 0.1	-1.8
nitrogen source	nitrogen source nitrate 20mM	-1.6
carbon source	Tween 20 (C)	-1.4
temperature shift	Temperature shift 10_to_34; with MOPS	-1.3
pH	Growth at pH7 and (C) D-Glucose	-1.1
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	-1.0
toxin	pUC18_phdP1_pSU18T_docP1	-1.0
nitrogen source	no extra (N); with MOPS	-1.0
carbon source	D-Glucose (C) with 20AA_mix_minus_Cys	-0.9
micoeukaryotes	C.elegans, mixed culture-2	-0.8
stress	MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.8
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8
supernatant	Supernatant; Paenibacillus sp. UNCCL52 spent media 0.5x	-0.8
supernatant	LB 0.1x with 55.5 mM D-Glucose with Supernatant: Acinetobacter	-0.8
carbon source	butyrate (C)	-0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.8
pH	Growth at pH6 and (C) Trisodium citrate	+0.8
carbon source	4-Hydroxyvalerate (C) (40mM)	+0.8
carbon source	BC Lignin Sorghum 20 vol% (C)	+0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	+0.8
temperature shift	Temperature shift 30_to_25; with MOPS	+0.8
pH	D-Glucose (C) pH 6	+0.8
carbon source	4-Hydroxyvalerate (C) (40mM)	+0.9
temperature shift	Temperature shift 10_to_25; with MOPS	+0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.0
carbon source	Glucose (C) (40mM)	+1.1
carbon source	Glucose (C) (20mM)	+1.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.8
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