Fitness for 1 genes in Pseudomonas putida KT2440

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Group Condition PP_2948
phage P. putida South MOI 10 -0.5
carbon source Valerolactone (C) -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4
temperature shift Temperature shift 10_to_25; with MOPS -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.4
stress Growth with Chloride 500 mM; with MOPS -0.4
carbon source Nonanoic (C) -0.3
stress Formaldehyde 0.03125 vol% +0.3
carbon source L-Alanine (C) +0.3
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.3
carbon source carbon source D-Glucose 55.5 mM +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.3
carbon source D-Glucose (C) +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.4
carbon source carbon source 3-O-methyl-glucose 50 mM +0.4
pH pH 8 +0.4
carbon source carbon source Bisabolol 45 mM +0.4
carbon source carbon source 4-vinylphenol 0.1 mM +0.4
pH pH 4 +0.4
carbon source 2-Methylbutanoic (C) +0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5
pH pH 6 +0.5
pH pH 7 +0.5
carbon source carbon source 2-Deoxy-D-glucose 100 mM +0.5
carbon source carbon source 4-vinylphenol 0.01 mM +0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.6
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PP_2948